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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LCN2, lipocalin 2
Sequence ID:NM_005564
Entrez Gene ID:3934
Ensembl ID:ENSG00000148346

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 130911731 - 130915022

NM_005564 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1211130911731130911941
212348130912516130912652
349428130913916130913995
429548130914184130914303
549650130914461130914562
651677130915378130915404
678822130915589130915733

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5421124Full LengthBC033089lipocalin 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005555  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005564 NP_005555 P80188 Lipocalin

Related Sequences

 
mRNAGenPeptSwissProt
S75256 AAD14168 P80188
BC033089 AAH33089 P80188
EU644752 ACD02429 B2ZDQ1
AK301694 BAG63166 P80188
AK316217 BAH14588 P80188
X83006 CAA58127 P80188
CR542092 CAG46889 P80188

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LCN2 NP_005555 R.norvegicus Lcn2 170496   NP_570097 63
M.musculus Lcn2 16819 Gene Info NP_032517 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)