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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CHD7, chromodomain helicase DNA binding protein 7
Sequence ID:NM_017780
RefSeqGene ID:NG_007009
Entrez Gene ID:55636
Ensembl ID:ENSG00000171316

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
CHARGE SYNDROMESEMA3E
HYPOGONADOTROPIC HYPOGONADISM 5 WITH OR WITHOUT ANOSMIA 
HYPOGONADOTROPIC HYPOGONADISM 7 WITH OR WITHOUT ANOSMIAFGF8
FGFR1
GNRH1
GNRHR
KISS1
KISS1R
NELF
PROK2
TAC3
TACR3
SCOLIOSIS, IDIOPATHIC 3 

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 61712994 - 61777685

 Exon Info From UCSC:
NM_017780

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069137Full LengthBC172443chromodomain helicase DNA binding protein 7
3352674IncompleteBC033116chromodomain helicase DNA binding protein 7
3354323IncompleteBC041018chromodomain helicase DNA binding protein 7
3636644IncompleteBC051264chromodomain helicase DNA binding protein 7
3866722IncompleteBC014681chromodomain helicase DNA binding protein 7
5220216IncompleteBC110818chromodomain helicase DNA binding protein 7
6010918IncompleteBC068000chromodomain helicase DNA binding protein 7
6148161IncompleteBC053890chromodomain helicase DNA binding protein 7
6340273IncompleteBC080627chromodomain helicase DNA binding protein 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060250  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_017780 NP_060250 Q9P2D1 EC 3.6.4.12 SNF2_N
Helicase_C
Chromo
TCH

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC014681 AAH14681 Q9P2D1 EC 3.6.4.12
BC051264 AAH51264 Q9P2D1 EC 3.6.4.12
BC053890 AAH53890 Q9P2D1 EC 3.6.4.12
BC068000 AAH68000 Q9P2D1 EC 3.6.4.12
BC080627 AAH80627 Q9P2D1 EC 3.6.4.12
BC110818 AAI10819 Q9P2D1 EC 3.6.4.12
BC172443 AAI72443    
GU060498 ACY35999 D0VBA5  
AK000364 BAA91113 Q9P2D1 EC 3.6.4.12
AK000368 BAA91116 Q9P2D1 EC 3.6.4.12
AB037837 BAA92654 Q9P2D1 EC 3.6.4.12
AK123158 BAC85544 Q6ZWF9  
AK295751 BAG58582 B4DIS0  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHD7 NP_060250 M.musculus Chd7 320790 Gene Info NP_001074886 95
R.norvegicus Chd7 312974   NP_001101376 94
D.melanogaster kis 33185   NP_523441 48
A.gambiae AgaP_AGAP008482 1277495   XP_316961 44
C.elegans tag-192 172079   NP_491426 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)