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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OTP, orthopedia homeobox
Sequence ID:NM_032109
Entrez Gene ID:23440
Ensembl ID:ENSG00000171540

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 76924536 - 76934522

NM_032109 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2621077692453776926618
210825177693264576933054
251827027693433776934521

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3354882Full LengthBC001800orthopedia homeobox

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_115485  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_032109 NP_115485 Q5XKR4 Homeobox
OAR

Related Sequences

 
mRNAGenPeptSwissProt
BC001800 AAH01800 Q5XKR4
EU446696 ABZ92225  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OTP NP_115485 M.musculus Otp 18420 Gene Info NP_035151 100
R.norvegicus Otp 294640   XP_215445 100
A.gambiae AgaP_AGAP005099 1274774   XP_313975 54
D.melanogaster otp 37364   NP_001036563 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)