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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCOLCE, procollagen C-endopeptidase enhancer
Sequence ID:NM_002593
Entrez Gene ID:5118
Ensembl ID:ENSG00000106333

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 100200023 - 100205798

NM_002593 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1293100199881100200173
294402100201052100201160
403661100201581100201839
662786100202713100202837
787923100203298100203434
9241138100204038100204252
11391210100205074100205145
12111381100205259100205429
13821618100205559100205795

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3163857Full LengthBC000574procollagen C-endopeptidase enhancer
4896776Full LengthBC033205procollagen C-endopeptidase enhancer

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002584  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002593 NP_002584 Q15113 CUB
NTR

Related Sequences

 
mRNAGenPeptSwissProt
L33799 AAA61949 Q15113
BC000574 AAH00574 Q15113
BC033205 AAH33205 Q15113
DQ891923 ABM82849  
DQ895108 ABM86034  
AB008549 BAA23281 Q15113
AK313748 BAG36488 Q15113
AK298364 BAG60606 B4DPJ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCOLCE NP_002584 R.norvegicus Pcolce 29569   NP_062110 86
M.musculus Pcolce 18542 Gene Info NP_032814 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)