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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. CCDC47, coiled-coil domain containing 47
Sequence ID:NM_020198
Entrez Gene ID:57003
Ensembl ID:ENSG00000108588

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 61823779 - 61842153

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3688068Full LengthBC008905coiled-coil domain containing 47
3865335IncompleteBC013600coiled-coil domain containing 47

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064583  

Protein Infomation

NM_020198 NP_064583 Q96A33 DUF1682

Related Sequences

AF226054 AAF86954 Q96A33
AF113221 AAG39292 Q96A33
BC008905 AAH08905 Q96A33
BC013600 AAH13600 Q96A33
DQ896573 ABM87572  
AK027786 BAB55367 Q96A33
AK027844 BAB55407 Q96A33
AK075387 BAC11587 Q96A33
AK314328 BAG36975 Q96A33

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens CCDC47 NP_064583 R.norvegicus Ccdc47 303606   NP_001013996 98
M.musculus Ccdc47 67163 Gene Info NP_080285 98
A.gambiae AgaP_AGAP010007 1279434   XP_319151 46
D.melanogaster CG17593 33573   NP_608786 45
C.elegans ccdc-47 175505   NP_497788 39
A.thaliana AT4G24330 828536   NP_194164 32
A.thaliana AT5G49945 835058   NP_568716 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)