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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BASP1, brain abundant, membrane attached signal protein 1
Sequence ID:NM_001271606
NM_006317
Entrez Gene ID:10409
Ensembl ID:ENSG00000176788

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5p15.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 17217890 - 17276744

Transcript StartTranscript EndChromosomal Start Chromosomal End
11701721774917217918
17117891727531617276934

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822874Full LengthBC000518brain abundant, membrane attached signal protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006308  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001271606 NP_001258535    
NM_006317 NP_006308 P80723 BASP1

Related Sequences

 
mRNAGenPeptSwissProt
AF039656 AAC67374 P80723
BC000518 AAH00518 P80723
BT019340 AAV38147 P80723
BT019341 AAV38148 P80723
DQ894566 ABM85492  
EU176302 ABW03753  
AK295995 BAG58770 P80723

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BASP1 NP_006308 M.musculus Basp1 70350 Gene Info NP_081671 75
R.norvegicus Basp1 64160   NP_071636 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)