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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. CDK5RAP3, CDK5 regulatory subunit associated protein 3
Sequence ID:NM_176096
Entrez Gene ID:80279
Ensembl ID:ENSG00000108465

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 46048507 - 46059144

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4130677Full LengthBC009957CDK5 regulatory subunit associated protein 3
5751801Full LengthBC072435CDK5 regulatory subunit associated protein 3
2988445IncompleteBC013407CDK5 regulatory subunit associated protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_788276  

Protein Infomation

NM_176096 NP_788276 Q96JB5 DUF773

Related Sequences

AF217982 AAG17225 Q96JB5
AF110322 AAG39277 Q96JB5
BC009957 AAH09957 Q96JB5
BC072435 AAH72435 Q96JB5
AF343090 AAK69655 Q96JB5
HQ448144 ADQ32625  
AK023722 BAB14657 Q96JB5
AB062433 BAB93496 Q96JB5
AK223387 BAD97107 Q96JB5
AK301739 BAG63203 B4DWZ1
AK300643 BAH13320 B7Z6N4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens CDK5RAP3 NP_788276 M.musculus Cdk5rap3 80280 Gene Info NP_084524 89
A.gambiae AgaP_AGAP009811 1279226   XP_318917 43
C.elegans Y113G7B.16 180327   NP_507910 43
D.melanogaster CG30291 246534   NP_726016 39
A.thaliana AT5G06830 830574   NP_196301 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)