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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CKAP5, cytoskeleton associated protein 5
Sequence ID:NM_001008938
NM_014756
RefSeqGene ID:NG_029924
Entrez Gene ID:9793
Ensembl ID:ENSG00000175216

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11p11.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 46832580 - 46867829

 Exon Info From UCSC:
NM_001008938
NM_014756

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40072423Full LengthBC120869cytoskeleton associated protein 5
40072425Full LengthBC120870cytoskeleton associated protein 5
4699215IncompleteBC017856cytoskeleton associated protein 5
5520886IncompleteBC111043cytoskeleton associated protein 5
6463629IncompleteBC070136cytoskeleton associated protein 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001008938  NP_055571  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001008938 NP_001008938 Q14008 HEAT
NM_014756 NP_055571   HEAT

Related Sequences

 
mRNAGenPeptSwissProt
BC017856 AAH17856 Q14008
BC035554 AAH35554 Q8IYN5
BC070136 AAH70136 Q14008
BC111043 AAI11044 Q14008
BC120869 AAI20870 Q14008
BC120870 AAI20871 Q14008
D43948 BAA07892 Q14008
X92474 CAA63212 Q14008

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CKAP5 NP_001008938 M.musculus Ckap5 75786 Gene Info NP_001159461 95
R.norvegicus Ckap5 311191   XP_230282 95
A.gambiae AgaP_AGAP011162 1270767   XP_309487 46
D.melanogaster msps 41952   NP_732105 44
A.thaliana MOR1 818131   NP_565811 31
C.elegans zyg-9 174350   NP_495784 28

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)