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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. SDCBP, syndecan binding protein (syntenin)
Sequence ID:NM_001007067
Entrez Gene ID:6386
Ensembl ID:ENSG00000137575

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 59465734 - 59495417

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8322726Full LengthBC113674syndecan binding protein (syntenin)
8322728Full LengthBC113676syndecan binding protein (syntenin)
9052433Full LengthBC143915syndecan binding protein (syntenin)
9052434Full LengthBC143916syndecan binding protein (syntenin)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001007069  NP_005616  NP_001007070  NP_001007068  NP_001007071  

Protein Infomation

NM_001007067 NP_001007068 O00560 PDZ
NM_001007068 NP_001007069   PDZ
NM_001007069 NP_001007070   PDZ
NM_001007070 NP_001007071   PDZ
NM_005625 NP_005616 O00560 PDZ

Related Sequences

U83463 AAB51246 O00560
AF000652 AAB97144 O00560
AF006636 AAC52050 O00560
BC113674 AAI13675 O00560
BC113676 AAI13677 O00560
BC143915 AAI43916 O00560
BC143916 AAI43917 O00560
HQ258156 ADR82910  
AK312274 BAG35204 O00560
AK295198 BAG58197 B4DHN5
AK298697 BAG60855 B4DQ93
AK300647 BAG62335 O00560

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens SDCBP NP_001007068 M.musculus Sdcbp 53378 Gene Info NP_001091697 91
R.norvegicus Sdcbp 83841   NP_114192 90
A.gambiae AgaP_AGAP009569 1278930   XP_318581 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)