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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. VAMP1, vesicle-associated membrane protein 1 (synaptobrevin 1)
Sequence ID:NM_014231
NM_016830
NM_199245
Entrez Gene ID:6843
Ensembl ID:ENSG00000139190

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12p

Chromosomal Position (from UCSC)

Chromosomal Position:12: 6571614 - 6579819

 Exon Info From UCSC:
NM_014231
NM_016830
NM_199245

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4943992Full LengthBC023286vesicle-associated membrane protein 1 (synaptobrevin 1)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058439  NP_954740  NP_055046  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014231 NP_055046 P23763 Synaptobrevin
NM_016830 NP_058439   Synaptobrevin
NM_199245 NP_954740   Synaptobrevin

Related Sequences

 
mRNAGenPeptSwissProt
AF060538 AAC28336 P23763
BC023286 AAH23286 P23763
AK289498 BAF82187 A8K0D3
AK296294 BAG58997 B4DJY5
AK303137 BAG64241 B4DZX9
Z48924 CAA88760 P23763
CR542214 CAG47010 P23763
CR542231 CAG47027 P23763
CR749485 CAH18312 P23763

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VAMP1 NP_055046 M.musculus Vamp1 22317 Gene Info NP_033522 98
R.norvegicus Vamp1 25624   NP_037222 96
D.melanogaster n-syb 38196   NP_477058 63
A.gambiae AgaP_AGAP005507 1276192   XP_001688670 60

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)