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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HDAC7, histone deacetylase 7
Sequence ID:NM_001098416
NM_015401
NM_016596
Entrez Gene ID:51564
Ensembl ID:ENSG00000061273

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 48177456 - 48192923

 Exon Info From UCSC:
NM_001098416
NM_015401

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6179239Full LengthBC064840histone deacetylase 7
3851375IncompleteBC020505histone deacetylase 7
4054348IncompleteBC006453histone deacetylase 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056216  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001098416 NP_001091886      
NM_015401 NP_056216 Q8WUI4 EC 3.5.1.98 Hist_deacetyl

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF239243 AAF63491 Q8WUI4 EC 3.5.1.98
BC006453 AAH06453 Q8WUI4 EC 3.5.1.98
BC020505 AAH20505 Q8WUI4 EC 3.5.1.98
BC064840 AAH64840 Q8WUI4 EC 3.5.1.98
AY321367 AAP84704 Q8WUI4 EC 3.5.1.98
BT009771 AAP88773 Q8WUI4 EC 3.5.1.98
AY302468 AAQ18232 Q8WUI4 EC 3.5.1.98
AK001032 BAA91474 Q8WUI4 EC 3.5.1.98
AK001190 BAA91545 Q8WUI4 EC 3.5.1.98
AK026767 BAB15546 Q9H5S4  
AK024469 BAB15759 Q8WUI4 EC 3.5.1.98
AK027781 BAB55363 Q8WUI4 EC 3.5.1.98
AK122588 BAC56929 Q8WUI4 EC 3.5.1.98
AK128383 BAG54670 Q8WUI4 EC 3.5.1.98
AK299292 BAG61307 Q8WUI4 EC 3.5.1.98
AK301545 BAG63042 Q8WUI4 EC 3.5.1.98
AK303481 BAG64517 Q8WUI4 EC 3.5.1.98
AL117455 CAB55935 Q8WUI4 EC 3.5.1.98

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HDAC7 NP_056216 M.musculus Hdac7 56233 Gene Info NP_062518 90
R.norvegicus Hdac7 84582   XP_345869 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)