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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PDGFB, platelet-derived growth factor beta polypeptide
Sequence ID:NM_002608
NM_033016
RefSeqGene ID:NG_012111
Entrez Gene ID:5155
Ensembl ID:ENSG00000100311

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 39619688 - 39621268

 Exon Info From UCSC:
NM_002608
NM_033016

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5174750Full LengthBC029822platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog)
6379783Full LengthBC077725platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_148937  NP_002599  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002608 NP_002599 P01127 PDGF
PDGF_N
NM_033016 NP_148937   PDGF
PDGF_N

Related Sequences

 
mRNAGenPeptSwissProt
M12783 AAA60553 P01127
BC029822 AAH29822 P01127
BC077725 AAH77725 P01127
X02744 CAA26524 P01127
X02811 CAA26579 P01127
X03702 CAA27333 P01127
X83705 CAA58679 Q15354
CR456538 CAG30424 P01127
CR541807 CAG46606 P01127
CU013138 CAK54569  
CU013426 CAK54868  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PDGFB NP_002599 M.musculus Pdgfb 18591 Gene Info NP_035187 90
R.norvegicus Pdgfb 24628   NP_113712 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta