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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTPRU, Protein tyrosine phosphatase, receptor type, U
Sequence ID:NM_005704
NM_133177
NM_133178
NM_001195001
Entrez Gene ID:10076
Ensembl ID:ENSG00000060656

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 29585978 - 29653311

 Exon Info From UCSC:
NM_005704
NM_133177
NM_133178

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40147934Full LengthBC146655protein tyrosine phosphatase, receptor type, U

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_573438  NP_573439  NP_005695  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001195001 NP_001181930      
NM_005704 NP_005695 Q92729 EC 3.1.3.48 fn3
Y_phosphatase
MAM
NM_133177 NP_573438     fn3
Y_phosphatase
MAM
NM_133178 NP_573439     fn3
Y_phosphatase
MAM

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U73727 AAB51343 Q92729 EC 3.1.3.48
U71075 AAC51938 Q92729 EC 3.1.3.48
BC146655 AAI46656 Q92729 EC 3.1.3.48
AB208855 BAD92092 Q92729 EC 3.1.3.48
AK094849 BAG52941 B3KT29  
X95712 CAA65016 Q92729 EC 3.1.3.48
X97198 CAA65832 Q92729 EC 3.1.3.48

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTPRU NP_573438 M.musculus Ptpru 19273 Gene Info NP_035344 95
R.norvegicus Ptpru 116680   XP_342931 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)