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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC7A4, Solute carrier family 7 (orphan transporter), member 4
Sequence ID:NM_004173
Entrez Gene ID:6545
Ensembl ID:ENSG00000099960

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:22q11.21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 21383007 - 21386842

NM_004173 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
125232138300721383518
5246322138362421383732
63312732138399921384639
127422952138511921386140
229623232138681921386846

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3958091Full LengthBC008814solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
5165369Full LengthBC062565solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
40033862Full LengthBC107160solute carrier family 7 (cationic amino acid transporter, y+ system), member 4
40033864Full LengthBC107161solute carrier family 7 (cationic amino acid transporter, y+ system), member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004164  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_004173 NP_004164 O43246 AA_permease

Related Sequences

 
mRNAGenPeptSwissProt
BC008814 AAH08814 O43246
BC062565 AAH62565 O43246
BC107160 AAI07161 O43246
BC107161 AAI07162 O43246
DQ892673 ABM83599  
DQ895900 ABM86826  
AJ000730 CAA04263 O43246
CR456580 CAG30466 O43246
CU013177 CAK54608  
CU013465 CAK54907  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC7A4 NP_004164 R.norvegicus Slc7a4 303787   NP_001100548 82
M.musculus Slc7a4 224022 Gene Info NP_659101 81
A.gambiae AgaP_AGAP010567 1275301   XP_314539 48
D.melanogaster CG13248 40254   NP_649219 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)