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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IRX4, Iroquois homeobox 4
Sequence ID:NM_016358
Entrez Gene ID:50805
Ensembl ID:ENSG00000113430

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5p15.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 1877540 - 1887293

NM_016358 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
9137418775401878905
1375170318796171879945
1704181318808381880947
1814206518819211882172
2066222918827161882879

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3450161Full LengthBC110912iroquois homeobox 4
9020494Full LengthBC136505iroquois homeobox 4
9020495Full LengthBC136506iroquois homeobox 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057442  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016358 NP_057442 P78413 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
U90306 AAB50004 P78413
AF124733 AAF23887 P78413
BC110912 AAI10913 P78413
BC136505 AAI36506 P78413
BC136506 AAI36507 P78413
AB690778 BAL44219 H1AFL0
AB690779 BAL44220 H1AFL1
AB690780 BAL44221 H1AFL0
AB690781 BAL44222 H1AFL1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IRX4 NP_057442 M.musculus Irx4 50916 Gene Info NP_061373 84
R.norvegicus Irx4 306655   NP_001100800 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)