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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. ECH1, enoyl CoA hydratase 1, peroxisomal
Sequence ID:NM_001398
Entrez Gene ID:1891
Ensembl ID:ENSG00000104823

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 39306063 - 39322432

NM_001398 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
163093930606339306356
3104603930649639306646
4615323930692339306994
5336033930709239307162
6046683930770439307768
6697173930795539308003
7188423930809039308214
8439313932171739321805
93211393932194839322155
114012763932236039322496

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4300082Full LengthBC011792enoyl Coenzyme A hydratase 1, peroxisomal
4306900Full LengthBC017408enoyl Coenzyme A hydratase 1, peroxisomal
3858114IncompleteBC014786enoyl Coenzyme A hydratase 1, peroxisomal

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001389  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001398 NP_001389 Q13011 ECH

Related Sequences

 
mRNAGenPeptSwissProt
U16660 AAC50222 Q13011
BC011792 AAH11792 Q13011
BC017408 AAH17408 Q13011
DQ892926 ABM83852  
DQ896175 ABM87174  
AK291860 BAF84549 Q13011
AK301211 BAG62786 B4DVS4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ECH1 NP_001389 R.norvegicus Ech1 64526   NP_072116 75
M.musculus Ech1 51798 Gene Info NP_058052 74
D.melanogaster CG9577 33016   NP_608375 53
A.gambiae AgaP_AGAP002661 1273299   XP_312264 49
N.crassa NCU06647 3877018   XP_960880 47
A.thaliana DCI1 834346   NP_199142 46
C.elegans Y25C1A.13 173657   NP_494448 46
C.elegans F58A6.1 186486   NP_494954 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)