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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HDAC9, histone deacetylase 9
Sequence ID:NM_001204144
NM_001204145
NM_001204146
NM_001204147
NM_001204148
NM_014707
NM_058176
NM_178423
NM_178425
NM_058177
RefSeqGene ID:NG_023250
Entrez Gene ID:9734
Ensembl ID:ENSG00000048052

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7p21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 18535368 - 18708465

 Exon Info From UCSC:
NM_014707
NM_058176
NM_178423
NM_178425

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860495Full LengthBC150328histone deacetylase 9
8862508Full LengthBC152405histone deacetylase 9
40036015IncompleteBC111735histone deacetylase 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_478056  NP_848510  NP_848512  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001204144 NP_001191073      
NM_001204145 NP_001191074      
NM_001204146 NP_001191075      
NM_001204147 NP_001191076      
NM_001204148 NP_001191077      
NM_014707 NP_055522      
NM_058176 NP_478056 Q9UKV0 EC 3.5.1.98 Hist_deacetyl
NM_178423 NP_848510     Hist_deacetyl
NM_178425 NP_848512     Hist_deacetyl

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF124924 AAF04254 Q9UKV0 EC 3.5.1.98
BC111735 AAI11736 Q9UKV0 EC 3.5.1.98
BC150328 AAI50329 Q9UKV0 EC 3.5.1.98
BC152405 AAI52406 Q9UKV0 EC 3.5.1.98
AY032737 AAK66821 Q9UKV0 EC 3.5.1.98
AY032738 AAK66822 Q9UKV0 EC 3.5.1.98
AY197371 AAO27363 Q9UKV0 EC 3.5.1.98
EU832247 ACE86817    
EU832248 ACE86818    
EU832154 ACE87504    
AB018287 BAA34464 Q9UKV0 EC 3.5.1.98
AK095820 BAC04630 Q8N926  
AK097178 BAC04971 Q8N879  
AK296214 BAH12283 B7Z3P7  
AK297404 BAH12570 B7Z4I4  
AK304298 BAH14153 Q9UKV0 EC 3.5.1.98
AK304343 BAH14164 B7Z928  
AK304410 BAH14176 B7Z940  
AK316109 BAH14480 B7Z3P7  
AJ459808 CAD30851 Q9UKV0 EC 3.5.1.98
CR749550 CAH18349 Q68D71  

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta