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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. AATF, Apoptosis antagonizing transcription factor
Sequence ID:NM_012138
Entrez Gene ID:26574
Ensembl ID:ENSG00000108270

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 35306257 - 35414136

 Exon Info From UCSC:
NM_012138

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3346769Full LengthBC000591apoptosis antagonizing transcription factor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036270  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_012138 NP_036270 Q9NY61 TRAUB

Related Sequences

 
mRNAGenPeptSwissProt
AF083208 AAD52016 Q9NY61
AF161395 AAF28955 Q9NY61
BC000591 AAH00591 Q9NY61
DQ892097 ABM83023  
DQ895290 ABM86216  
AK057229 BAG51888 Q9NY61
AJ249940 CAB57451 Q9NY61

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens AATF NP_036270 R.norvegicus Aatf 114512   NP_446172 85
M.musculus Aatf 56321 Gene Info NP_062790 84
D.melanogaster CG11188 33943   NP_609066 37
A.gambiae AgaP_AGAP007394 1269788   XP_308438 36
N.crassa NCU04787 3876588   XP_960413 36
A.thaliana AT5G61330 836254   NP_200941 35
S.pombe SPAC664.08c 2543540   NP_593456 35
C.elegans Y73E7A.2 171723   NP_490870 33
S.cerevisiae BFR2 851893   NP_010585 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)