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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC10A2, solute carrier family 10 (sodium/bile acid cotransporter family), member 2
Sequence ID:NM_000452
RefSeqGene ID:NG_016648
Entrez Gene ID:6555
Ensembl ID:ENSG00000125255

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
BILE ACID MALABSORPTION, PRIMARY 

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 103697605 - 103718632

NM_000452 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
32263103696349103698609
22642421103701638103701795
24222597103703606103703781
25982686103704969103705057
26872805103710613103710731
28063779103718222103719195

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40146552Full LengthBC130521solute carrier family 10 (sodium/bile acid cotransporter family), member 2
40146554Full LengthBC130523solute carrier family 10 (sodium/bile acid cotransporter family), member 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000443  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000452 NP_000443 Q12908 SBF

Related Sequences

 
mRNAGenPeptSwissProt
U10417 AAC51870 Q12908
BC130521 AAI30522 Q12908
BC130523 AAI30524 Q12908
HQ258177 ADR82931  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC10A2 NP_000443 R.norvegicus Slc10a2 29500   NP_058918 83
M.musculus Slc10a2 20494 Gene Info NP_035518 81
A.thaliana AT2G26900 817231   NP_850089 32
D.melanogaster CG9903 32621   NP_573132 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)