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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. CLCA1, chloride channel accessory 1
Sequence ID:NM_001285
Entrez Gene ID:1179
Ensembl ID:ENSG00000016490

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 86934050 - 86965942

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062570Full LengthBC156805chloride channel accessory 1
100014740BC141451chloride channel accessory 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001276  

Protein Infomation

NM_001285 NP_001276   CLCA_N

Related Sequences

AF039400 AAC95428 A8K7I4
AF127036 AAD25487 A8K7I4
BC141451 AAI41452  
BC156805 AAI56806  
AK291999 BAF84688 A8K7I4
AK314375 BAG37002 A8K7I4
AK097057 BAG53415 B3KUF3
AK300858 BAG62508 B4DUZ6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens CLCA1 NP_001276 M.musculus Clca3 23844 Gene Info NP_059502 76
R.norvegicus Clca1 308015   NP_001100919 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)