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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VTI1A, vesicle transport through interaction with t-SNAREs homolog 1A (yeast)
Sequence ID:NM_145206
Entrez Gene ID:143187
Ensembl ID:ENSG00000151532

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10q25.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 114206755 - 114210481

NM_145206 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1470114206755114207224
471529114220282114220340
530640114224305114224415
641718114286845114286922
719803114298004114298088
804874114427976114428046
875936114428695114428756
9374389114575048114578500

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3885564Full LengthBC017052vesicle transport through interaction with t-SNAREs homolog 1A (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_660207  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145206 NP_660207 Q96AJ9 V-SNARE

Related Sequences

 
mRNAGenPeptSwissProt
BC017052 AAH17052 Q96AJ9
JF432603 ADZ15820  
AK303646 BAG64649 Q96AJ9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VTI1A NP_660207 R.norvegicus Vti1a 65277   NP_075589 96
M.musculus Vti1a 53611 Gene Info NP_058558 95
C.elegans Y57G11C.4 178397   NP_502781 44
A.gambiae AgaP_AGAP009322 1271234   XP_309991 43
D.melanogaster Vti1 38085   NP_612053 39
S.pombe vti1 2540970   NP_596668 35
A.thaliana SGR4 833947   NP_198767 35
S.cerevisiae VTI1 855237   NP_013924 33
N.crassa NCU05959 3874727   XP_958573 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)