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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TNPO3, Transportin 3
Sequence ID:NM_012470
NM_001191028
RefSeqGene ID:NG_023428
Entrez Gene ID:23534
Ensembl ID:ENSG00000064419

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q32.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 128595420 - 128694937

 Exon Info From UCSC:
NM_012470
NM_001191028

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069206Full LengthBC172512transportin 3
3508018IncompleteBC009923transportin 3
3927816IncompleteBC009221transportin 3
5301701IncompleteBC068530transportin 3
100063123BC156517transportin 3

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001191028 NP_001177957    
NM_012470 NP_036602 Q9Y5L0  

Related Sequences

 
mRNAGenPeptSwissProt
AF145029 AAD38537 Q9Y5L0
BC009221 AAH09221 Q9Y5L0
BC156517 AAI56518  
BC172512 AAI72512  
AK312580 BAG35474 B2R6H7
AK001263 BAG50881 B3KM69
AK022910 BAG51133 B3KMX1
AJ133769 CAB42643 Q9Y5L0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNPO3 NP_036602 M.musculus Tnpo3 320938 Gene Info NP_796270 99
R.norvegicus Tnpo3 296954   NP_001100057 99
A.gambiae AgaP_AGAP003576 1274240   XP_562427 46
D.melanogaster Trn-SR 33465   NP_608708 43
C.elegans tsr-1 173601   NP_494279 31
A.thaliana AT5G62600 836381   NP_201066 27
S.cerevisiae MTR10 854331   NP_014803 27
S.pombe SPBC11G11.07 2539916   NP_595725 27
N.crassa NCU06355 3878528   XP_962389 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)