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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LIMD1, LIM domains containing 1
Sequence ID:NM_014240
Entrez Gene ID:8994
Ensembl ID:ENSG00000144791

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 45636350 - 45721565

NM_014240 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
114574563632245637778
145815594567764145677742
156016274570714145707208
162816904570978545709847
169118214571418145714311
182218734571494545714996
187419424571583445715902
194362834571841345722753

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40125787Full LengthBC117236LIM domains containing 1
40125789Full LengthBC117238LIM domains containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055055  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014240 NP_055055 Q9UGP4 LIM

Related Sequences

 
mRNAGenPeptSwissProt
BC117236 AAI17237 Q9UGP4
BC117238 AAI17239 Q9UGP4
HQ258355 ADR83109  
AJ132408 CAB63652 Q9UGP4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LIMD1 NP_055055 M.musculus Limd1 29806 Gene Info NP_038888 79
R.norvegicus Limd1 316101   NP_001106208 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)