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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLCN6, chloride channel, voltage-sensitive 6
Sequence ID:NM_001256959
NM_001286
NR_046428
NM_021735
NM_021736
NM_021737
RefSeqGene ID:NG_008766
Entrez Gene ID:1185
Ensembl ID:ENSG00000011021

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 11866247 - 11900825

 Exon Info From UCSC:
NM_001286
NM_021735
NM_021736
NM_021737

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40125971Full LengthBC117420chloride channel 6
40125975Full LengthBC117424chloride channel 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001277  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001256959 NP_001243888    
NM_001286 NP_001277 P51797 CBS
Voltage_CLC

Related Sequences

 
mRNAGenPeptSwissProt
BC117420 AAI17421 P51797
BC117424 AAI17425 P51797
HQ258635 ADR83387  
D28475 BAA05836 P51797
AK289999 BAF82688 P51797
AK294764 BAG57898 B4DGT7
X83378 CAA58292 P51797
X96391 CAA65255 P51797
X99473 CAA67836 P51797
X99474 CAA67837 P51797
X99475 CAA67838 P51797

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLCN6 NP_001277 M.musculus Clcn6 26372 Gene Info NP_036059 97
R.norvegicus Clcn6 295586   NP_001099949 97
A.thaliana CLC-D 832693   NP_197996 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)