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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEC61B, Sec61 beta subunit
Sequence ID:NM_006808
Entrez Gene ID:10952
Ensembl ID:ENSG00000106803

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9q22.32-q31.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:9: 101984889 - 101992892

NM_006808 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
179101984569101984647
80177101984827101984924
178279101990180101990281
280561101992618101992899

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3502133Full LengthBC001734Sec61 beta subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006799  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006808 NP_006799 P60468 Sec61_beta

Related Sequences

 
mRNAGenPeptSwissProt
L25085 AAA19706 P60468
BC001734 AAH01734 P60468
AK223384 BAD97104 Q53FA5
CR456883 CAG33164 P60468
CR542159 CAG46956 P60468

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEC61B NP_006799 M.musculus Sec61b 66212 Gene Info NP_077133 99
R.norvegicus Sec61b 298068   NP_001100124 99
D.melanogaster Sec61beta 46080   NP_652037 72
A.gambiae AgaP_AGAP011504 1278377   XP_317795 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)