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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GOPC, golgi-associated PDZ and coiled-coil motif containing
Sequence ID:NM_001017408
NM_020399
Entrez Gene ID:57120
Ensembl ID:ENSG00000047932

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, skin, soft tissue, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 117884416 - 117923527

 Exon Info From UCSC:
NM_001017408
NM_020399

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3898495Full LengthBC009553golgi associated PDZ and coiled-coil motif containing

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065132  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001017408 NP_001017408    
NM_020399 NP_065132 Q9HD26 PDZ

Related Sequences

 
mRNAGenPeptSwissProt
AF287894 AAG00572 Q9HD26
BC009553 AAH09553 Q9HD26
AY033606 AAK57733 Q9HD26
AF450008 AAL47160 Q9HD26
HQ447312 ADQ31799  
AB209385 BAD92622 Q9HD26

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GOPC NP_065132 M.musculus Gopc 94221 Gene Info NP_444417 92
C.elegans ZK849.2 3565651   NP_001021877 58

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)