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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNX9, sorting nexin 9
Sequence ID:NM_016224
Entrez Gene ID:51429
Ensembl ID:ENSG00000130340

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q25.1-q26Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 158317963 - 158365567

 Exon Info From UCSC:
NM_016224

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3832234Full LengthBC005022sorting nexin 9
2958415IncompleteBC001084sorting nexin 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057308  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016224 NP_057308 Q9Y5X1 SH3_1
PX

Related Sequences

 
mRNAGenPeptSwissProt
AF001629 AAD00898 O95061
AF121859 AAD27832 Q9Y5X1
AF076957 AAD43001 Q9Y5X1
AF131214 AAF04473 Q9Y5X1
BC001084 AAH01084 Q9Y5X1
BC005022 AAH05022 Q9Y5X1
AF172847 AAL54871 Q9Y5X1
AF190158 AAQ13702 Q7Z4B8
DQ893300 ABM84226  
DQ896789 ABM87788  
AB209736 BAD92973 Q59ES5
AK314360 BAG36992 B2RAU5
AK127345 BAG54490 B3KXH8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNX9 NP_057308 M.musculus Snx9 66616 Gene Info NP_079940 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)