Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CHD1L, chromodomain helicase DNA binding protein 1-like
Sequence ID:NM_001256336
NM_001256337
NM_001256338
NM_004284
NM_024568
NR_046070
Entrez Gene ID:9557
Ensembl ID:ENSG00000131778

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 146714368 - 146742667


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6573666Full LengthBC077717chromodomain helicase DNA binding protein 1-like
3355762IncompleteBC001171chromodomain helicase DNA binding protein 1-like
3618220IncompleteBC005038chromodomain helicase DNA binding protein 1-like
3867677IncompleteBC008649chromodomain helicase DNA binding protein 1-like
5744469IncompleteBC043501chromodomain helicase DNA binding protein 1-like

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004275  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001256336 NP_001243265      
NM_001256337 NP_001243266      
NM_001256338 NP_001243267      
NM_004284 NP_004275 Q86WJ1 EC 3.6.4.12 SNF2_N
Helicase_C
NM_024568 NP_078844      

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF054177 AAC39911 O75435  
BC001171 AAH01171 Q86WJ1 EC 3.6.4.12
BC005038 AAH05038 Q86WJ1 EC 3.6.4.12
BC008649 AAH08649 Q86WJ1 EC 3.6.4.12
BC043501 AAH43501 Q86WJ1 EC 3.6.4.12
BC077717 AAH77717 Q86WJ1 EC 3.6.4.12
AF537213 AAO49505 Q86WJ1 EC 3.6.4.12
EF560738 ABQ59048 Q86WJ1 EC 3.6.4.12
AK001342 BAA91637 Q86WJ1 EC 3.6.4.12
AK026183 BAB15386 Q9H678  
AK027631 BAB55248 Q86WJ1 EC 3.6.4.12
AK223496 BAD97216 Q86WJ1 EC 3.6.4.12
AK293157 BAG56702 B4DDE1  
AK297135 BAG59638 B4DLS6  
AK298424 BAG60647 B4DPN5  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CHD1L NP_004275 R.norvegicus Chd1l 310707   NP_001101174 89
M.musculus Chd1l 68058 Gene Info NP_080815 88
A.thaliana AT2G44980 819106   NP_973689 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)