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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HMGB3, high mobility group box 3
Sequence ID:NM_005342
Entrez Gene ID:3149
Ensembl ID:ENSG00000029993

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 150157818 - 150159236

NM_005342 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
187150151762150151848
88242150154067150154221
243382150154523150154662
383557150155600150155774
5583554150156249150159245

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6140626Full LengthBC070482high-mobility group box 3
4993089IncompleteBC037210high-mobility group box 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005333  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005342 NP_005333 O15347 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
L05085 AAC15850 Q16466
BC070482 AAH70482 O15347
EU446508 ABZ92037  
Y10043 CAA71143 O15347
BX537505 CAD97768 Q7Z684
AM393246 CAL38124 O15347
AM393784 CAL38659  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HMGB3 NP_005333 M.musculus Hmgb3 15354 Gene Info NP_032279 98
R.norvegicus Hmgb3 305373   XP_223440 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)