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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRGN, serglycin
Sequence ID:NM_002727
NR_036430
Entrez Gene ID:5552
Ensembl ID:ENSG00000122862

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q22.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 70847871 - 70863876

NM_002727 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11657084782770847991
1663137085683970856986
31412527086362670864564

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3883161Full LengthBC015516serglycin
4688573IncompleteBC022313serglycin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002718  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002727 NP_002718 P10124 Serglycin

Related Sequences

 
mRNAGenPeptSwissProt
J03223 AAA60179 P10124
BC015516 AAH15516 P10124
DQ891442 ABM82368  
DQ894620 ABM85546  
D28395 BAA05761  
AK311873 BAG34814 P10124
X12765 CAA31255 P10124
X17042 CAA34900 P10124

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRGN NP_002718 R.norvegicus Srgn 56782   NP_064459 59
M.musculus Srgn 19073 Gene Info NP_035287 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)