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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. LSM6, LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
Sequence ID:NM_007080
Entrez Gene ID:11157
Ensembl ID:ENSG00000164167

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q31.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 147096897 - 147111080

NM_007080 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1129147096834147096962
130233147104063147104166
234347147108425147108538
348786147110773147111211

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3910698Full LengthBC016026LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
4390329IncompleteBC019894LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009011  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007080 NP_009011 P62312 LSM

Related Sequences

 
mRNAGenPeptSwissProt
AF182292 AAD56230 P62312
BC016026 AAH16026 P62312
DQ892328 ABM83254  
EU176507 ABW03308  
AK312126 BAG35062 P62312
AJ238098 CAB45869 P62312

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LSM6 NP_009011 M.musculus Lsm6 78651 Gene Info NP_084421 100
R.norvegicus Lsm6 498934   NP_001119557 100
R.norvegicus LOC100360750 100360750   XP_002728048 100
A.thaliana AT3G59810 825150   NP_191540 90
A.gambiae AgaP_AGAP005314 1276023   XP_315329 88
D.melanogaster CG9344 37372   NP_611528 86
A.thaliana AT2G43810 818985   NP_001078052 85
C.elegans lsm-6 190601   NP_490883 81
S.pombe lsm6 2541997   NP_594380 68
P.falciparum PF13_0142 814113   XP_001349990 64

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)