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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COPS4, COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
Sequence ID:NM_016129
NM_001258006
Entrez Gene ID:51138
Ensembl ID:ENSG00000138663

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 83956382 - 83996944

Transcript StartTranscript EndChromosomal Start Chromosomal End
12138395623883956450
2142938396677883966857
2944458397031883970469
4465498397103383971136
5507038397807883978231
7048548397841083978560
85510258398422883984398
102611418398759083987705
114212268398959083989674
122717478399644983996969

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3623514Full LengthBC004302COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
4111685Full LengthBC009292COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)
30340740Full LengthBC093007COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057213  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001258006 NP_001244935    
NM_016129 NP_057213 Q9BT78 PCI

Related Sequences

 
mRNAGenPeptSwissProt
AF100757 AAD43021 Q9BT78
BC004302 AAH04302 Q9BT78
BC009292 AAH09292 Q9BT78
BC093007 AAH93007 Q9BT78
JF432698 ADZ15915  
AK001210 BAA91555 Q9BT78
AK223178 BAD96898 Q53FV3
AK001148 BAG50860 B3KM48
AK024005 BAG51250 Q9BT78
AK094238 BAG52847 B3KST5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COPS4 NP_057213 M.musculus Cops4 26891 Gene Info NP_036131 100
R.norvegicus Cops4 360915   NP_001004275 99
D.melanogaster CSN4 35759   NP_001163080 73
A.gambiae AgaP_AGAP009834 1279253   XP_318948 72
A.thaliana COP8 834312   NP_199111 52
N.crassa NCU07361 3874281   XP_958134 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)