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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAP1A, RAP1A, member of RAS oncogene family
Sequence ID:NM_001010935
NM_002884
Entrez Gene ID:5906
Ensembl ID:ENSG00000116473

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 112233982 - 112251856

 Exon Info From UCSC:
NM_001010935
NM_002884

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4422971Full LengthBC014086RAP1A, member of RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001010935  NP_002875  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001010935 NP_001010935 P62834 Ras
NM_002884 NP_002875 P62834 Ras

Related Sequences

 
mRNAGenPeptSwissProt
M22995 AAA36150 P62834
BC014086 AAH14086 P62834
AF493912 AAM12626 P62834
BT019666 AAV38472 Q5U0C3
EU831554 ACE86473  
EU831467 ACE87154  
AB051846 BAB61868  
AK293044 BAF85733 A8KAH9
AB451235 BAG70049 A8KAH9
AB451360 BAG70174 A8KAH9
X12533 CAA31051 P62834

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAP1A NP_001010935 R.norvegicus Rap1a 295347   NP_001005765 100
M.musculus Rap1a 109905 Gene Info NP_663516 100
C.elegans rap-1 177709   NP_501549 90
A.gambiae AgaP_AGAP001874 1281247   XP_550942 87
D.melanogaster R 38244   NP_001189023 87

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta