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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. MYL12A, myosin, light chain 12A, regulatory, non-sarcomeric
Sequence ID:NM_006471
Entrez Gene ID:10627
Ensembl ID:ENSG00000101608

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18p11.31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 3247851 - 3249922

NM_006471 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
138032475273247906
38157632532303253425
57773832538863254047
739122332557433256227

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4293343Full LengthBC016372myosin, light chain 12A, regulatory, non-sarcomeric
4836883Full LengthBC031972myosin, light chain 12A, regulatory, non-sarcomeric
5563221Full LengthBC032748myosin, light chain 12A, regulatory, non-sarcomeric

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006462  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001144944 NP_001138416    
NM_001144945 NP_001138417    
NM_006471 NP_006462 Q53X45
P19105
efhand
NM_033546 NP_291024   efhand

Related Sequences

 
mRNAGenPeptSwissProt
U26162 AAA67367 O14950
BC004994 AAH04994 O14950
BC016372 AAH16372 Q53X45
P19105
BC031972 AAH31972 Q53X45
P19105
BC032748 AAH32748 Q53X45
P19105
AY320408 AAP73808 O14950
DQ185044 ABD14424 Q2F834
DQ892814 ABM83740  
DQ896060 ABM87059  
D50372 BAA23323 O14950
D82058 BAB88918 O14950
D82059 BAB88919 Q53X45
P19105
AK222569 BAD96289 Q53HL1
AK291145 BAF83834 Q53X45
AK291726 BAF84415 O14950
X54304 CAA38201 Q53X45
P19105

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MYL12A NP_006462 M.musculus Myl12a 67268 Gene Info NP_080340 98
R.norvegicus RGD1309537 501203   NP_001128489 98
A.gambiae AgaP_AGAP000927 1270410   XP_309109 82
D.melanogaster sqh 31554   NP_511057 82
C.elegans mlc-4 175440   NP_497700 73

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)