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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX21, SRY (sex determining region Y)-box 21
Sequence ID:NM_007084
Entrez Gene ID:11166
Ensembl ID:ENSG00000125285

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q31-q32Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 95364087 - 95364249

NM_007084 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
3025379536188195364388

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40080556Full LengthBC111584SRY (sex determining region Y)-box 21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_009015  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007084 NP_009015 Q9Y651 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC111584 AAI11585  
X65666 CAA46617 Q9Y651
X71136 CAA50466 Q9Y651

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX21 NP_009015 M.musculus Sox21 223227 Gene Info NP_808421 100
A.gambiae AgaP_AGAP010922 4577582   XP_001230649 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)