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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. IFT88, intraflagellar transport 88 homolog (Chlamydomonas)
Sequence ID:NM_006531
NM_175605
Entrez Gene ID:8100
Ensembl ID:ENSG00000032742

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13q12.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 21179194 - 21206278

 Exon Info From UCSC:
NM_006531
NM_175605

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4824965Full LengthBC030776intraflagellar transport 88 homolog (Chlamydomonas)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_783195  NP_006522  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006531 NP_006522   TPR_1
TPR_2
NM_175605 NP_783195 Q13099 TPR_1
TPR_2

Related Sequences

 
mRNAGenPeptSwissProt
U20362 AAA86720 Q13099
BC030776 AAH30776 Q13099
EU176494 ABW03295  
EU176190 ABW03641  
AK126668 BAG54354 B3KX42
AK300769 BAG62434 Q13099
AK303853 BAG64794 B4E1I2
BX640833 CAE45907 Q6MZX0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens IFT88 NP_783195 M.musculus Ift88 21821 Gene Info NP_033402 89
R.norvegicus Ift88 305918   NP_001100736 87
C.elegans osm-5 180585   NP_508511 47
A.gambiae AgaP_AGAP006324 1276940   XP_556988 43
D.melanogaster nompB 35414   NP_724347 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)