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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RANGAP1, Ran GTPase activating protein 1
Sequence ID:NM_002883
Entrez Gene ID:5905
Ensembl ID:ENSG00000100401

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:22q13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:22: 41642446 - 41676770

 Exon Info From UCSC:
NM_002883

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3506039Full LengthBC014044Ran GTPase activating protein 1
5277434Full LengthBC041396Ran GTPase activating protein 1
2905857IncompleteBC004990Ran GTPase activating protein 1
4516363IncompleteBC019676Ran GTPase activating protein 1
5271569IncompleteBC048990Ran GTPase activating protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002874  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002883 NP_002874 P46060 LRR_1
RanGAP1_C

Related Sequences

 
mRNAGenPeptSwissProt
BC004990 AAH04990 Q9BSK3
BC014044 AAH14044 P46060
BC019676 AAH19676 Q8WUS7
BC041396 AAH41396 P46060
AB058738 BAB47464 P46060
AK302222 BAG63578 B4DY16
AK303524 BAG64552 B4E0U0
X82260 CAA57714 P46060
CR456557 CAG30443 P46060
CU013157 CAK54588  
CU013445 CAK54887  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RANGAP1 NP_002874 R.norvegicus Rangap1 362965   NP_001012199 92
M.musculus Rangap1 19387 Gene Info NP_001139646 89
A.gambiae AgaP_AGAP008267 5668303   XP_001689011 44
N.crassa NCU03207 3881456   XP_965307 43
D.melanogaster RanGap 35223   NP_476712 42
S.pombe rna1 2541863   NP_594833 38
S.cerevisiae RNA1 855275   NP_013962 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta