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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MRPL20, mitochondrial ribosomal protein L20
Sequence ID:NM_017971
Entrez Gene ID:55052
Ensembl ID:ENSG00000242485

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.3-p36.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 1337298 - 1342624

NM_017971 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1837713372761337635
37845513411881341265
45656613422881342398
56774913425101342692

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3542715Full LengthBC009515mitochondrial ribosomal protein L20
4045076Full LengthBC014316mitochondrial ribosomal protein L20
5397911Full LengthBC059945mitochondrial ribosomal protein L20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060441  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_017971 NP_060441 Q9BYC9 Ribosomal_L20

Related Sequences

 
mRNAGenPeptSwissProt
BC009515 AAH09515 Q9BYC9
BC014316 AAH14316 Q9BYC9
BC059945 AAH59945 Q9BYC9
AK000886 BAA91406 Q9NWH4
AB049644 BAB40849 Q9BYC9
AK315794 BAG38138 Q9BYC9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MRPL20 NP_060441 M.musculus Mrpl20 66448 Gene Info NP_079846 88
R.norvegicus Mrpl20 680747   NP_001102898 87
A.gambiae AgaP_AGAP001311 5667583   XP_001689366 42
A.thaliana AT1G16740 838245   NP_173118 42
D.melanogaster mRpL20 39477   NP_524051 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)