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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. VAPB, VAMP (vesicle-associated membrane protein)-associated protein B and C
Sequence ID:NM_001195677
NM_004738
NR_036633
RefSeqGene ID:NG_008073
Entrez Gene ID:9217
Ensembl ID:ENSG00000124164

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
AMYOTROPHIC LATERAL SCLEROSIS 8 
SPINAL MUSCULARATROPHY, LATE-ONSET, FINKEL TYPE 

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 56993266 - 57019644

Transcript StartTranscript EndChromosomal Start Chromosomal End
13295696424456964572
3304825699326656993418
4835865700965757009760
5876675701400057014080
6688445701596257016138
84536735701913257021960

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3543354Full LengthBC001712VAMP (vesicle-associated membrane protein)-associated protein B and C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004729  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001195677 NP_001182606    
NM_004738 NP_004729 O95292
Q53XM7
Motile_Sperm

Related Sequences

 
mRNAGenPeptSwissProt
AF086628 AAD13577 O95292
Q53XM7
AF086629 AAD13578 O95292
AF160212 AAF67013 O95292
BC001712 AAH01712 O95292
Q53XM7
BT009811 AAP88813 O95292
Q53XM7
AY358464 AAQ88829 O95292
Q53XM7
HQ447372 ADQ31858  
AK127252 BAC86901 Q6ZSP7
AK128422 BAC87433 Q6ZR82
AB209665 BAD92902 Q59EZ6
AK023241 BAG51174 Q53XM7
AK123538 BAG53909 B3KVU7
AK298036 BAG60336 B4DNS4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens VAPB NP_004729 M.musculus Vapb 56491 Gene Info NP_062780 90
R.norvegicus Vapb 60431   NP_068619 88
A.gambiae AgaP_AGAP000626 1271682   XP_310452 55
D.melanogaster Vap-33-1 31349   NP_570087 41
C.elegans vpr-1 172259   NP_491704 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)