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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SRRM1, serine/arginine repetitive matrix 1
Sequence ID:NM_005839
Entrez Gene ID:10250
Ensembl ID:ENSG00000133226

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 24969812 - 24999755

 Exon Info From UCSC:
NM_005839

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4827738Full LengthBC036187serine/arginine repetitive matrix 1
3937531IncompleteBC017315serine/arginine repetitive matrix 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005830  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005839 NP_005830 Q8IYB3 PWI

Related Sequences

 
mRNAGenPeptSwissProt
AF048977 AAC09321 Q8IYB3
BC036187 AAH36187 Q8IYB3
AF419855 AAP97290 Q8IYB3
AK293576 BAG57046 B4DED5
AK302498 BAH13726 B7Z7U0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SRRM1 NP_005830 M.musculus Srrm1 51796 Gene Info NP_058079 96
R.norvegicus Srrm1 313620   NP_001101456 96
C.elegans rsr-1 173013   NP_492875 41
A.thaliana AT2G29210 817470   NP_180484 38
D.melanogaster SRm160 39483   NP_648627 34
A.gambiae AgaP_AGAP005366 3289953   XP_556004 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)