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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TMEM9, transmembrane protein 9
Sequence ID:NM_016456
Entrez Gene ID:252839
Ensembl ID:ENSG00000116857

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Unknown

Chromosomal Position (from UCSC)

Chromosomal Position:1: 201104790 - 201123051

NM_016456 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
201062201103900201104942
10631194201112947201113078
11951303201115867201115975
13041395201120888201120979
13961497201122985201123086
14981557201123572201123631

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3506442Full LengthBC001106transmembrane protein 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057540  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016456 NP_057540 Q9P0T7 TMEM9

Related Sequences

 
mRNAGenPeptSwissProt
AF151020 AAF36106 Q9P0T7
BC001106 AAH01106 Q9P0T7
AY138587 AAN15925 Q9P0T7
AY359012 AAQ89371 Q9P0T7
AK054883 BAB70820 Q9P0T7
AB013909 BAB87799 Q9P0T7
AK075335 BAC11554 Q9P0T7
AK296307 BAG59006 B4DJZ4
AK303843 BAG64786 B4E1H4
AL136600 CAB66535 Q9P0T7
Q6FIF9
CR457162 CAG33443 Q6IAJ3
CR533467 CAG38498 Q6FIF9
AM393313 CAL38191  
AM393607 CAL38483  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TMEM9 NP_057540 M.musculus Tmem9 66241 Gene Info NP_001153617 97
A.gambiae AgaP_AGAP007259 1269889   XP_308543 39
D.melanogaster CG1161 40638   NP_001014606 36
C.elegans R12C12.6 187840   NP_001040796 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)