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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTSS, cathepsin S
Sequence ID:NM_001199739
NM_004079
Entrez Gene ID:1520
Ensembl ID:ENSG00000163131

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 150702671 - 150704967

Transcript StartTranscript EndChromosomal Start Chromosomal End
43071150702553150705620
30723174150720252150720354
31753340150722481150722646
33413568150724256150724483
35693718150727476150727625
37193841150730333150730455
38423968150737113150737239
39694100150738173150738304

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3610589Full LengthBC002642cathepsin S

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004070  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001199739 NP_001186668      
NM_004079 NP_004070 P25774 EC 3.4.22.27 Peptidase_C1
Inhibitor_I29

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
M86553 AAA35655 P25774 EC 3.4.22.27
S93414 AAB22005 P25774 EC 3.4.22.27
M90696 AAC37592 P25774 EC 3.4.22.27
BC002642 AAH02642 P25774 EC 3.4.22.27
AK314482 BAG37086 P25774 EC 3.4.22.27
AK301472 BAG62991 P25774 EC 3.4.22.27
CR541676 CAG46477 P25774 EC 3.4.22.27

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTSS NP_004070 R.norvegicus Ctss 50654   NP_059016 78
M.musculus Ctss 13040 Gene Info NP_067256 76
A.thaliana XBCP3 837517   NP_563855 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)