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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLA-A, major histocompatibility complex, class I, A
Sequence ID:XM_003960035
XM_003960036
XM_003960037
XM_003960038
XM_003960039
XM_003960040
XM_003960041
XM_003960042
XM_003960043
XM_003960044
XM_003960045
NM_001242758
NM_002116
RefSeqGene ID:NG_029217
Entrez Gene ID:3105
Ensembl ID:ENSG00000206503

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
HYPERSENSITIVITY SYNDROME, CARBAMAZEPINE-INDUCED, SUSCEPTIBILITYTOHLA-B
HLA-B
SPONDYLOARTHROPATHYHLA-B
HLA-B

Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 29910332 - 29917383

Transcript StartTranscript EndChromosomal Start Chromosomal End
19512036691203763
9636512038941204163
36664112044051204680
64264412046831204685
64591712052841205556
918103412056561205772
1035106712062111206243
1068111512063861206433
1116154812066031207035

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2821717Full LengthBC019236major histocompatibility complex, class I, A
3510139Full LengthBC003069major histocompatibility complex, class I, A
4157200Full LengthBC008611major histocompatibility complex, class I, A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002107  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001242758 NP_001229687 P30443  
NM_002116 NP_002107 P04439 MHC_I
MHC_I_C
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
U03907 AAA03605 P10314
U03697 AAA03720 Q5SPM2
P30450
L18898 AAA17012 Q09160
M12377 AAA17889 Q9UM27
M98453 AAA35991 P30450
M27537 AAA36227 Q29945
M32321 AAA36234 P18462
M11887 AAA52656 P01892
M12758 AAA59598 Q29926
M84375 AAA59599 P16189
M64740 AAA59600 Q95J06
P05534
M27971 AAA59602 O19689
M84377 AAA59603 P01892
M84378 AAA59604 P01892
M84379 AAA59606 P01892
Q53Z42
M27538 AAA59636 Q29946
M27539 AAA59637 Q29947
M24042 AAA59653 Q5MAG5
P01892
M24095 AAA59655 P30450
U25971 AAA73518 Q29689
U36914 AAA80238 Q29724
U07161 AAA80569 P30443
U18930 AAA87076 P01892
U43334 AAA87570 Q29739
U43335 AAA87571 Q29740
U43336 AAA87572 Q29741
Q29920
U52429 AAB08574 P30450
U56825 AAB17465 P01892
U45480 AAB38491 P30450
U41057 AAB41292 P01891
M23739 AAB47873 P30512
Q6EXB0
U83415 AAB53373 P30512
Q6EXB0
L76936 AAB59614 Q29756
U50574 AAB60406 P13746
U32184 AAB63980 P04439
AF015930 AAB66582 P04439
AF008933 AAB66704 O19642
AF012766 AAB70187 O62891
O19520
AF012767 AAB70188 O62892
O19521
U03754 AAC04322 Q09160
AF036921 AAD02067 Q9TQB6
AF116214 AAD05568 Q9TQ74
AF116215 AAD05569 Q9TQ73
AF140506 AAD32673 Q9TQ65
AF165065 AAF25781 P13746
AF217561 AAF28734 P04439
AF287958 AAG27625 Q9GJ45
AF287959 AAG27626 Q9GJ44
AF305699 AAG30922 Q9GJ24
BC003069 AAH03069 Q5SUL5
P30443
BC008611 AAH08611 P18462
BC019236 AAH19236 Q8WUX3
AY191309 AAO20853 Q861F7
AY191310 AAO20854 Q861F6
AY225407 AAO43992 Q861E7
AY365426 AAQ64634 P01892
Q53Z42
AY786585 AAV53343 Q5S3G3
P13746
AY786586 AAV53344 P13746
AY786587 AAV53345 P13746
AY856830 AAX51797 Q52YL7
DQ327718 ABC55710 Q2MJJ6
DQ327719 ABC55711 Q2MJJ5
DQ327720 ABC55712 Q5SPM2
DQ327721 ABC55713 Q5S3G3
DQ327722 ABC55714 Q95J06
DQ336693 ABC59610 Q2LC95
DQ336694 ABC59611 P13746
DQ336695 ABC59612 Q2LC93
DQ891760 ABM82686  
EU176622 ABW03423  
JQ313909 AFH41801 H9ZYJ4
D14350 BAA03279 P30450
D14351 BAA03280 P30450
D14354 BAA03282 P30450
D16841 BAA04117 Q5S3G3
P13746
D16842 BAA04118 P13746
D16843 BAA04119 Q5SPM2
P30450
D26550 BAA05549 Q29907
D32129 BAA06855 P30450
D32130 BAA06856 Q5SPM2
P30450
D32131 BAA06857 Q5SPM2
P30450
D38525 BAA07530 Q29757
D50068 BAA08783 P30450
D83515 BAA11935 P01892
D83516 BAA11936 P05534
AK125608 BAC86217 Q6ZUK5
AB209117 BAD92354 Q59GJ2
AK313119 BAG35940 B2R7U3
AK296091 BAG58845 B4DJI3
AK301014 BAG62631 B4DVB9
AK301019 BAG62636 B4DVC4
AK301282 BAG62841 B4DVX9
AK304472 BAG65286 B4E2X4
AK316195 BAH14566 B7ZA80
AJ000661 CAA04209 P30512
AJ001269 CAA04643 Q9MYF6
O19672
AJ001274 CAA04647 P01891
Q29741
Q29920
X02457 CAA26297 P01892
X13111 CAA31503 Q5S3G3
P13746
X13112 CAA31504 P13746
X57954 CAA41022 P01892
X60108 CAA42702 P30512
X61700 CAA43869 P30455
X61703 CAA43872 P30456
X61704 CAA43873 P30453
X61711 CAA43880 P30457
X91399 CAA62745 O02968
P13746
X96638 CAA65442 Q95361
X96724 CAA65501 P01892
X97802 CAA66389 P18462
Y08275 CAA69599 O02968
Y11441 CAA72245 P79603
Y13028 CAA73473 O19671
Y13267 CAA73716 O02922
Z23071 CAA80612 P01892
Z27120 CAA81644 P01892
Z46633 CAA86602 P01892
Y17224 CAB38056 P13746
Y17224 CAB38057 P13746
X60764 CAB56609 Q8HX85
AJ249241 CAB56838 Q95J05
AJ290394 CAC27416 Q70I55
P30450
AJ580771 CAE45340 Q70I55
XM_003960035 XP_003960084  
XM_003960036 XP_003960085  
XM_003960037 XP_003960086  
XM_003960038 XP_003960087  
XM_003960039 XP_003960088  
XM_003960040 XP_003960089  
XM_003960041 XP_003960090  
XM_003960042 XP_003960091  
XM_003960043 XP_003960092  
XM_003960044 XP_003960093  
XM_003960045 XP_003960094  

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta