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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CXXC1, CXXC finger protein 1
Sequence ID:NM_001101654
NM_014593
Entrez Gene ID:30827
Ensembl ID:ENSG00000154832

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 47808716 - 47814188

 Exon Info From UCSC:
NM_001101654
NM_014593

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3922983Full LengthBC014940CXXC finger 1 (PHD domain)
4857493Full LengthBC015733CXXC finger 1 (PHD domain)
5114064IncompleteBC029922CXXC finger 1 (PHD domain)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055408  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001101654 NP_001095124    
NM_014593 NP_055408 Q9P0U4 PHD
zf-CXXC

Related Sequences

 
mRNAGenPeptSwissProt
AF149758 AAF37799 Q9P0U4
BC014940 AAH14940 Q9P0U4
BC015733 AAH15733 Q9P0U4
BC029922 AAH29922 Q9P0U4
DQ893798 ABM84724  
DQ890630 ABM92247  
AB031069 BAA96307 Q9P0U4
AB209883 BAD93120 Q59EC8
AK314886 BAG37400 Q9P0U4
AK294645 BAG57822 B4DGL1
AL136862 CAB66796 Q9P0U4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CXXC1 NP_055408 R.norvegicus Cxxc1 291440   NP_001073166 97
M.musculus Cxxc1 74322 Gene Info NP_083144 97
A.gambiae AgaP_AGAP004704 1278526   XP_318129 52
D.melanogaster CG17446 31880   NP_572556 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)