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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. H3F3B, H3 histone, family 3B (H3.3B)
Sequence ID:NM_005324
Entrez Gene ID:3021
Ensembl ID:ENSG00000132475

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q25.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 73773520 - 73775840

NM_005324 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
5123387377251673774803
233924927377489073775043
249326307377512773775264
263127537377573773775859

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2959756Full LengthBC006497H3 histone, family 3B (H3.3B)
2959756Full LengthBC012813H3 histone, family 3B (H3.3B)
2988279Full LengthBC001124H3 histone, family 3B (H3.3B)
3884607Full LengthBC081560H3 histone, family 3B (H3.3B)
3910031Full LengthBC017558H3 histone, family 3B (H3.3B)
6144255Full LengthBC108701H3 histone, family 3B (H3.3B)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005315  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005324 NP_005315 P84243 Histone

Related Sequences

 
mRNAGenPeptSwissProt
AF218029 AAG17271 P84243
BC001124 AAH01124 P84243
BC006497 AAH06497 P84243
BC012813 AAH12813 P84243
BC017558 AAH17558 P84243
BC108701 AAI08702 P84243
EU446957 ABZ92486  
AK312762 BAG35628 B2R6Y1
AK304607 BAG65392 B4E380
BX537379 CAD97621 P84243
AM393192 CAL38070  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens H3F3B NP_005315 H.sapiens H3F3A 3020 Gene Info NP_002098 100
R.norvegicus H3f3b 117056   NP_446437 100
R.norvegicus LOC100361558 100361558   XP_002728089 100
M.musculus Gm6749 627371 Gene Info XP_897119 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)