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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NUP35, nucleoporin 35kDa
Sequence ID:NM_138285
NM_001008544
Entrez Gene ID:129401
Ensembl ID:ENSG00000163002

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q32.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 183989082 - 184026167

Transcript StartTranscript EndChromosomal Start Chromosomal End
1143183989082183989224
144314183993014183993184
315442183995145183995272
443500183998293183998350
501642184016235184016376
643712184022171184022240
713841184023010184023138
8421006184024215184024379
10071632184025781184026406

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4132440Full LengthBC061698nucleoporin 35kDa
5541023Full LengthBC047029nucleoporin 35kDa
5194278IncompleteBC035597nucleoporin 35kDa

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_612142  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_138285 NP_612142 Q8NFH5 MPPN

Related Sequences

 
mRNAGenPeptSwissProt
BC047029 AAH47029 Q8NFH5
BC061698 AAH61698 Q8NFH5
AF411516 AAL86379 Q8NFH5
AF514993 AAM76704 Q8NFH5
HQ448650 ADQ33128  
AK289601 BAF82290 A8K0N6
AK290760 BAF83449 A8K3Z5
AK298199 BAG60469 B4DP57
AK302350 BAG63676 B4DYB4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NUP35 NP_612142 R.norvegicus Nup35 295692   NP_001004229 95
M.musculus Nup35 69482 Gene Info NP_081367 93
A.gambiae AgaP_AGAP008619 1275468   XP_314715 36
D.melanogaster CG6540 32851   NP_573314 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)