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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HLA-DOB, major histocompatibility complex, class II, DO beta
Sequence ID:NM_002120
RefSeqGene ID:NG_012008
Entrez Gene ID:3112
Ensembl ID:ENSG00000241106

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 32781741 - 32784791

NM_002120 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
185053278054032781027
5065373278121632781247
5386483278149932781609
6499303278209632782377
93112003278282032783089
120113883278463732784824

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4054784Full LengthBC006097major histocompatibility complex, class II, DO beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002111  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002120 NP_002111 Q5QNS2
P13765
MHC_II_beta
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
M26040 AAA59718 Q5QNS2
P13765
BC006097 AAH06097 Q5QNS2
P13765
AY645723 AAV97948 Q5QNS2
P13765
AK301415 BAH13478 B7Z742
AK316197 BAH14568 B7Z742
X03066 CAA26870 Q5QNS2
P13765
CR541811 CAG46610 Q6FHE3
CR541832 CAG46631 P13765

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HLA-DOB NP_002111 M.musculus H2-Ob 15002 Gene Info NP_034519 76
R.norvegicus RT1-DOb 365542   NP_001008846 75

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)