Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC32A1, solute carrier family 32 (GABA vesicular transporter), member 1
Sequence ID:NM_080552
Entrez Gene ID:140679
Ensembl ID:ENSG00000101438

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 37352867 - 37353207

NM_080552 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16533735310437353756
65425753735609437358015

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5180816Full LengthBC053582solute carrier family 32 (GABA vesicular transporter), member 1
4813726IncompleteBC036458solute carrier family 32 (GABA vesicular transporter), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_542119  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_080552 NP_542119 Q9H598 Aa_trans

Related Sequences

 
mRNAGenPeptSwissProt
BC036458 AAH36458 Q9H598
BC053582 AAH53582 Q9H598
AY044836 AAK98782 Q9H598
AK055051 BAB70846 Q9H598
AK091079 BAG52280 B3KR68

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC32A1 NP_542119 R.norvegicus Slc32a1 83612   NP_113970 99
M.musculus Slc32a1 22348 Gene Info NP_033534 99
A.gambiae AgaP_AGAP011116 1270809   XP_309530 50
D.melanogaster VGAT 36574   NP_610938 49
C.elegans unc-47 176431   NP_499255 43
A.thaliana AT3G54830 824648   NP_191043 27
S.cerevisiae AVT1 853457   NP_012534 27
N.crassa NCU06231 3879237   XP_963082 27
A.thaliana AT2G39130 818499   NP_850312 25

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)