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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. MBD3, methyl-CpG binding domain protein 3
Sequence ID:NM_003926
RefSeqGene ID:NG_029897
Entrez Gene ID:53615
Ensembl ID:ENSG00000071655

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19p13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:19: 1576677 - 1592652

NM_003926 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1186015766771578536
1861203815810901581267
2039212915826201582710
2130226715845381584675
2268242715850531585212
2428255915925201592651

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4122128Full LengthBC009372methyl-CpG binding domain protein 3
6156267Full LengthBC043619methyl-CpG binding domain protein 3
3508344IncompleteBC009438methyl-CpG binding domain protein 3
4873970IncompleteBC018784methyl-CpG binding domain protein 3
5123212IncompleteBC032443methyl-CpG binding domain protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003917  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003926 NP_003917 O95983 MBD

Related Sequences

 
mRNAGenPeptSwissProt
AF072247 AAC68876 O95983
BC009372 AAH09372 O95983
BC009438 AAH09438 O95983
BC018784 AAH18784 Q8WV36
BC032443 AAH32443 O95983
BC043619 AAH43619 O95983
AK290882 BAF83571 O95983
AK001474 BAG50920 B3KMA8
X58233 CAA41191  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MBD3 NP_003917 M.musculus Mbd3 17192 Gene Info NP_038623 96
R.norvegicus Mbd3 362834   NP_001102205 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta