Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. COL4A1, collagen, type IV, alpha 1
Sequence ID:NM_001845
RefSeqGene ID:NG_011544
Entrez Gene ID:1282
Ensembl ID:ENSG00000187498

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
ANGIOPATHY, HEREDITARY, WITH NEPHROPATHY, ANEURYSMS, AND MUSCLE 
BRAIN SMALL VESSEL DISEASE WITH AXENFELD-RIEGERANOMALY 
PORENCEPHALY 1 

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 110801317 - 110959489

 Exon Info From UCSC:
NM_001845

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40148649Full LengthBC151220collagen, type IV, alpha 1
4941939IncompleteBC047305collagen, type IV, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001836  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001845 NP_001836 P02462 Collagen
C4

Related Sequences

 
mRNAGenPeptSwissProt
M10940 AAA52006 P02462
M11315 AAA52042 P02462
AF258349 AAF72630 P02462
BC047305 AAH47305 P02462
BC142626 AAI42627 A5PKV2
BC151220 AAI51221 P02462
AF363672 AAK53382 P02462
AF400431 AAK92480 P02462
AF536207 AAM97359 P02462
AY285780 AAP43112 P02462
DQ464183 ABE73157 P02462
EU260121 ABX47006 A9LSU1
AB209646 BAD92883 Q59F15
X05561 CAA29075 P02462
Y00706 CAA68698 P02462

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens COL4A1 NP_001836 M.musculus Col4a1 12826 Gene Info NP_034061 91
R.norvegicus Col4a1 290905   NP_001128481 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta